Publications

 

Title Journal Publication Date PMID
Systematic Establishment of Robustness and Standards in Patient-Derived Xenograft Experiments and Analysis Cancer Research 3/9/20 32152150
The pan-cancer landscape of prognostic germline variants in 10,582 patients Genome Medicine 2/17/20 32066500
A protein‐centric approach for exome variant aggregation enables sensitive association analysis with clinical outcomes Human Mutation 1/12/20 31930623
Improved detection of gene fusions by applying statistical methods reveals oncogenic RNA cancer drivers PNAS 7/30/19 31308241
Pregnancy-Associated Plasma Protein-A (PAPP-A) in Ewing Sarcoma: Role in Tumor Growth and Immune Evasion JNCI 1/20/19 30698726
The Germline Variants rs61757955 and rs34988193 Are Predictive of Survival in Lower Grade Glioma Patients Molecular Cancer Research 1/16/19 30651372
Structural Differences Between Pri-miRNA Paralogs Promote Alternative Drosha Cleavage and Expand Target Repertoires Cell Reports 1/8/19 30625327
Association analysis using somatic mutations PLOS Genetics 11/2/18 30388102
QuagmiR: a cloud-based application for isomiR big data analytics Bioinformatics 10/9/18 30295744
Recurrent Tumor-Specific Regulation of Alternative Polyadenylation of Cancer-Related Genes BMC Genomics 7/13/18 30005633
The Immune Landscape of Cancer  Immunity 4/17/18 29628290
Spatial Organization and Molecular Correlation of Tumor-Infiltrating Lymphocytes Using Deep Learning on Pathology Images Cell Reports 4/3/18 29617659
Scalable Open Science Approach for Mutation Calling of Tumor Exomes Using Multiple Genomic Pipelines  Cell Systems 3/28/18 29596782
Using the Seven Bridges Cancer Genomics Cloud to access and analyze petabytes of cancer data  Current Protocols in Bioinformatics 12/8/17 29220078
The ISB Cancer Genomic Cloud: A Flexible Cloud-Based Platform for Cancer Genomic Research  Cancer Research 11/1/17 29092928
The Cancer Genomics Cloud: Collaborative, reproducible, and democratized—a new paradigm in large-scale computational research  Cancer Research 11/1/17 29092927
A Comprehensive Infrastructure for Big Data in Cancer Research: Accelerating Cancer Research and Precision Medicine Front Cell Dev Biol. 9/21/17 28983483